Protinfo

The Protinfo web server consists of a series of discrete modules that make predictions of, and provide information about, protein folding, structure, function, interaction, evolution, and design by applying computational methodologies developed by our group. It serves as a complement to our Bioverse framework, where these modules are wholistically integrated, and other resources available as a result of our computational biology activities (see credits).


Function prediction

MFS protein meta-functional signature indicating functional importance of each residue
SOAK protein ion binding sites, types, affinities, and specificities from structure
PIRSpred protein inhibitor resistance/susceptibility prediction
FSSA protein functional signatures from structural alignments

Structure and interaction prediction

Protinfo ABCM protein tertiary structure using de novo and template modelling methods
Protinfo PPC protein complex structure structure prediction using the interolog method
Protinfo NMR protein tertiary structure using NMR chemical shift and NOESY data coupled with de novo simulation
PsiCSI protein secondary structure using NMR chemical shift data and neural networks

Related resources

CANDO computationally screen all known drugs against all known target structure to find new therapeutics
Nutritious Rice structure, function, interaction of rice proteins and proteomes
Decoys 'R' Us a database of incorrect protein conformations
Proteomusic convert complex 3D structures to complex 3D music
Prostring convert an arbitrary string using the amino acid alphabet

Protinfo || Bioverse || Samudrala Computational Biology Research Group || protinfo@compbio.washington.edu