Protinfo
The Protinfo web server consists of a series of discrete modules
that make predictions of, and provide information about, protein
folding, structure, function, interaction, evolution, and design by
applying computational
methodologies developed by our group. It serves as a complement to
our Bioverse
framework, where these modules are wholistically integrated, and
other resources available as a result of our computational biology
activities (see credits).
Function prediction
| MFS |
protein meta-functional signature indicating functional importance of each residue |
| SOAK |
protein ion binding sites, types, affinities, and specificities from structure |
| PIRSpred |
protein inhibitor resistance/susceptibility prediction |
| FSSA |
protein functional signatures from structural alignments |
Structure and interaction prediction
| Protinfo ABCM |
protein tertiary structure using de novo
and template modelling methods |
| Protinfo PPC |
protein complex structure structure prediction using the interolog method |
| Protinfo NMR |
protein tertiary structure using NMR chemical
shift and NOESY data coupled with de novo simulation |
| PsiCSI |
protein secondary structure using NMR chemical shift data and
neural networks |
Related resources
| CANDO |
computationally screen all known drugs against all known target structure to find new therapeutics |
| Nutritious Rice |
structure, function, interaction of rice proteins and proteomes |
| Decoys 'R' Us |
a database of incorrect protein conformations |
| Proteomusic |
convert complex 3D structures to complex 3D music
|
| Prostring |
convert an arbitrary string using the amino acid alphabet |
Protinfo ||
Bioverse ||
Samudrala Computational Biology Research Group ||
protinfo@compbio.washington.edu