The Protinfo web server consists of a series of discrete modules
that model, and provide information about, protein folding, structure,
function, interaction, evolution, and design by applying computational
methodologies developed by our group. It serves as a complement to
framework, where these modules are wholistically integrated, and
other resources available as a result of our computational biology
activities (see credits).
|| - fragment-based docking with dynamics.
|| - protein meta-functional signature indicating functional importance of each residue.
|| - protein ion binding sites, types, affinities, and specificities from structure.
|| - protein inhibitor resistance/susceptibility modelling.
|| - protein functional signatures from structural alignments.
|| - protein tertiary structure using de novo and template modelling methods.
|| - protein complex structure structure modelling using the interolog method.
|| - scores/pseudoenergies of protein conformations.
|| - protein tertiary structure using NMR chemical shift and NOESY data coupled with de novo simulation.
|| protein secondary structure using NMR chemical shift data and neural networks.
Hierarchies that encompass the above tools
|| - our group.
|| - object-oriented framework for exploring the relationships among the molecular, genomic, proteomic, systems, and organismal worlds.
|| - protein structure, function, and interaction modelling web server modules.
|| - in virtuale small molecule repurposing pipeline to revolutionise drug discovery.
|| - structure, function, interaction of rice proteins and proteomes to devise new forms of nutritious rice for the world.
| Decoys 'R' Us
|| - discriminate native like protein structures to evaluate scoring functions.
|| - convert complex 3D structures to complex 3D music.
|| - convert an arbitrary string using the amino acid alphabet.
|| - documentation and dialetic.
Samudrala Computational Biology Research Group ||