Protinfo AB CM

Currently, due to heavy usage (more than 20 sequences/day on average) because of the CASP experiment, the tertiary structure modelling server modules are quite slow in returning models.

Please read the documentation as well as some caveats based on the analysis of the server modules' performance before submitting a sequence. In particular, please do realise that the de novo approach is best only for smaller sequences (100 amino acids or less). Also, users submitting a large number of sequences simultaneously will be moved to a separate queue which would be (naturally) slower).

Submit the following information:

Target name:
Reply E-mail:
Sequence:

to:

generate comparative models
generate de novo models

The 3D template structure along with the alignment between the template and target proteins can optionally be supplied for comparative modelling and/or fold recognition (it is ignored otherwise):

Template PDB file:
Template sequence:
Target Sequence:

Submitting additional information puts the methods into a pre-emptive mode. If an alignment is provided, then that alignment along with a template structure (which must also be provided) is used for all further modelling. If a 3D structure is provided, then that structure is used as a template for modelling.

Check current prediction status of your job.

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