Protinfo AB CM

Currently, due to heavy usage (more than 20 sequences/day on average), expect delays for model building.

Please read the documentation as well as some caveats based on the analysis of the server modules' performance before submitting a sequence. In particular, please do realise that the de novo approach is best only for smaller sequences (100 amino acids or less). Also, users submitting a large number of sequences simultaneously will be moved to a separate queue which would be (naturally) slower).

Submit the following information:

Target name:
Reply E-mail:
Sequence:

to:

generate comparative models
generate de novo models

The 3D template structure along with the alignment between the template and target proteins can optionally be supplied for comparative modelling and/or fold recognition (it is ignored otherwise):

Template PDB file:
Template sequence:
Target Sequence:

Submitting additional information puts the methods into a pre-emptive mode. If an alignment is provided, then that alignment along with a template structure (which must also be provided) is used for all further modelling. If a 3D structure is provided, then that structure is used as a template for modelling.

Check current prediction status of your job.

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